eResearch Doc

User Tools

Site Tools

You are here: start » hpc » applications_and_libraries
hpc:applications_and_libraries

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
hpc:applications_and_libraries [2024/06/11 14:40] – Adrien Alberthpc:applications_and_libraries [2025/01/15 09:39] (current) – [FOSS toolchain] Yann Sagon
Line 195: Line 195:
  
  
-If you want to compile your software against MPI, it is very important not to compile using directly ''gcc'', ''icc'' or similar commands, but rather rely on the wrappers ''mpicc'', ''mpic++'', ''mpicxx'' or similar ones provided by module.+If you want to compile your software against MPI, it is very important not to compile using directly ''gcc'', ''icc'' or similar commands, but rather rely on the wrappers ''mpicc'', ''mpic<nowiki>++</nowiki>'', ''mpicxx'' or similar ones provided by module.
  
 All the newer versions of ''MPI'' will be available through the use of [[hpc:applications_and_libraries#module_-_lmod|module]]. All the newer versions of ''MPI'' will be available through the use of [[hpc:applications_and_libraries#module_-_lmod|module]].
Line 218: Line 218:
 |foss/2023a |gcc 12.3.0 |openmpi 4.1.5     | |foss/2023a |gcc 12.3.0 |openmpi 4.1.5     |
 |foss/2023b |gcc 13.2.0 |openmpi 4.1.6     | |foss/2023b |gcc 13.2.0 |openmpi 4.1.6     |
 +|foss/2024a |gcc 13.3.0 |openmpi 5.0.3     |
  
  
Line 557: Line 558:
 } }
 </code> </code>
- 
- 
- 
- 
- 
  
 <code> <code>
Line 587: Line 583:
 # Compile the test.cpp file # Compile the test.cpp file
 nvc++ test.cpp -o test nvc++ test.cpp -o test
- 
 </code> </code>
  
Line 1117: Line 1112:
 You can install R packages as a user. Just follow once the steps given below: You can install R packages as a user. Just follow once the steps given below:
  
-Create a file named .Rprofile (note the dot in front of the file) in your home directory with the following content:+Create a file named ''.Rprofile'' (note the dot in front of the file) in your home directory with the following content:
  
 <code> <code>
-(yggdrasil)-[alberta@login1 ~]$ cat ~/.Rprofile 
- 
 local({ local({
 r = getOption("repos") # hard code the Switzerland repo for CRAN r = getOption("repos") # hard code the Switzerland repo for CRAN
Line 1130: Line 1123:
  
  
-The first line is purely informative. The output may break things such as package installation. Feel free to comment out this line or remove it. +Create a file named ''.Renviron'' (note the dot in front of the file) in your home directory with the following content:
- +
-Create a file named .Renviron (note the dot in front of the file) in your home directory with the following content:+
  
 <code> <code>
hpc/applications_and_libraries.1718116849.txt.gz · Last modified: 2024/06/11 14:40 by Adrien Albert